gwascat-package: representing and modeling data in the NHGRI GWAS catalog
In vjcitn/gwascat: representing and modeling data in the EMBL-EBI GWAS catalog
Description
Details
Author(s)
References
Examples
Description
representing and modeling data in the NHGRI GWAS catalog,
using GRanges and allied infrastructure
Details
Package: gwascat
Version: 1.7.3
Suggests:
Depends: R (>= 3.0.0), methods, IRanges, GenomicRanges
Imports:
License: Artistic-2.0
LazyLoad: yes
Index:
1
gwaswloc-class Class '"gwaswloc"'
The GWAS catalog management has migrated to EMBL/EBI. Use
data(ebicat38) for an image dated 3 August 2015. Use makeCurrentGwascat()
to get a more recent image. Use data(ebicat37) for a GRCh37 (or hg19)
liftOver result. Use data(ebicat37UCSC) for an image with
hg19 as genome tag and UCSC seqnames.
The data objects
'g17SM' 'gg17N' 'gw6.rs_17' 'low17' 'rules_6.0_1kg_17'
'gwrngs'
are described in vignettes.
The DataFrame function is imported from IRanges.
The SnpMatrix-class is used to represent data
related to rule-based imputation, using the impute.snps
function.
si.hs.38 is a Seqinfo-class instance for hg38.
Author(s)
VJ Carey <stvjc@channing.harvard.edu>
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
References
Partial support from the Computational Biology Group at
Genentech, Inc.
Examples
1
2
vjcitn/gwascat documentation built on May 5, 2019, 7:59 p.m.
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Description Details Author(s) References Examples
Description
representing and modeling data in the NHGRI GWAS catalog, using GRanges and allied infrastructure
Details
| Package: | gwascat |
| Version: | 1.7.3 |
| Suggests: | |
| Depends: | R (>= 3.0.0), methods, IRanges, GenomicRanges |
| Imports: | |
| License: | Artistic-2.0 |
| LazyLoad: | yes |
Index:
1 | gwaswloc-class Class '"gwaswloc"'
|
The GWAS catalog management has migrated to EMBL/EBI. Use
data(ebicat38) for an image dated 3 August 2015. Use makeCurrentGwascat()
to get a more recent image. Use data(ebicat37) for a GRCh37 (or hg19)
liftOver result. Use data(ebicat37UCSC) for an image with
hg19 as genome tag and UCSC seqnames.
The data objects
'g17SM' 'gg17N' 'gw6.rs_17' 'low17' 'rules_6.0_1kg_17' 'gwrngs'
are described in vignettes.
The DataFrame function is imported from IRanges.
The SnpMatrix-class is used to represent data
related to rule-based imputation, using the impute.snps
function.
si.hs.38 is a Seqinfo-class instance for hg38.
Author(s)
VJ Carey <stvjc@channing.harvard.edu>
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
References
Partial support from the Computational Biology Group at Genentech, Inc.
Examples
1 2 |
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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