topTraits: operations on GWAS catalog
In vjcitn/gwascat: representing and modeling data in the EMBL-EBI GWAS catalog
Description
Usage
Arguments
Value
Author(s)
Examples
Description
operations on GWAS catalog
Usage
1
2
3
4
5
topTraits (gwwl, n=10, tag="DISEASE/TRAIT")
locs4trait(gwwl, trait, tag="DISEASE/TRAIT")
chklocs(chrtag="20", gwwl)
Arguments
gwwl
instance of gwaswloc
n
numeric, number of traits to report
tag
character, name of field to be used for trait enumeration
trait
character, trait to use for filtering
chrtag
character, chromosome identifier
Value
topTraits returns a character vector of most frequently
occurring traits in the database
locs4trait returns a gwaswloc
object with records defining associations to the specified trait
chklocs returns a logical that is TRUE when the
asserted locations of SNP in the GWAS catalog agree
with the locations given in the dbSNP package
SNPlocs.Hsapiens.dbSNP144.GRCh37
Author(s)
VJ Carey <stvjc@channing.harvard.edu>
Examples
1
2
vjcitn/gwascat documentation built on May 5, 2019, 7:59 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
operations on GWAS catalog
Usage
1 2 3 4 5 | topTraits (gwwl, n=10, tag="DISEASE/TRAIT")
locs4trait(gwwl, trait, tag="DISEASE/TRAIT")
chklocs(chrtag="20", gwwl)
|
Arguments
gwwl |
instance of |
n |
numeric, number of traits to report |
tag |
character, name of field to be used for trait enumeration |
trait |
character, trait to use for filtering |
chrtag |
character, chromosome identifier |
Value
topTraits returns a character vector of most frequently
occurring traits in the database
locs4trait returns a gwaswloc
object with records defining associations to the specified trait
chklocs returns a logical that is TRUE when the
asserted locations of SNP in the GWAS catalog agree
with the locations given in the dbSNP package
SNPlocs.Hsapiens.dbSNP144.GRCh37
Author(s)
VJ Carey <stvjc@channing.harvard.edu>
Examples
1 2 |
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