sampleAtts: retrieve a normalized data.frame of sample attributes for...
In vjcitn/htxcomp: Compendium of human transcriptome sequences
Description
Usage
Arguments
Note
Description
retrieve a normalized data.frame of sample attributes for SRAdbV2 study tibbles
Usage
1
sampleAtts(studyAcc, returnBad = FALSE, forcedTags = NULL)
Arguments
studyAcc
character(1) accession
returnBad
logical(1) returns tibble of experiment metadata for which number
of fields in sample.attributes is less than the number in the majority
forcedTags
NULL or character(), introduced to cope with studies
for which SRA metadata has inconsistent field sets across experiments.
Supply a vector of tags that need to be retrieved; when the metadata
lacks a value for the tag it is filled with NA.
Note
Sometimes a field is omitted for control experiments, and with manual programming
conformant metadata can be produced for these experiments. Sometimes there is substantial
diversity among sample.attribute fields recorded within a study.
vjcitn/htxcomp documentation built on May 17, 2019, 8:16 p.m.
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Description Usage Arguments Note
Description
retrieve a normalized data.frame of sample attributes for SRAdbV2 study tibbles
Usage
1 | sampleAtts(studyAcc, returnBad = FALSE, forcedTags = NULL)
|
Arguments
studyAcc |
character(1) accession |
returnBad |
logical(1) returns tibble of experiment metadata for which number of fields in sample.attributes is less than the number in the majority |
forcedTags |
NULL or character(), introduced to cope with studies for which SRA metadata has inconsistent field sets across experiments. Supply a vector of tags that need to be retrieved; when the metadata lacks a value for the tag it is filled with NA. |
Note
Sometimes a field is omitted for control experiments, and with manual programming conformant metadata can be produced for these experiments. Sometimes there is substantial diversity among sample.attribute fields recorded within a study.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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