vladpetyuk/MSnID: Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
Extracts MS/MS ID data from mzIdentML (leveraging mzID package) or text files. After collating the search results from multiple datasets it assesses their identification quality and optimize filtering criteria to achieve the maximum number of identifications while not exceeding a specified false discovery rate. Also contains a number of utilities to explore the MS/MS results and assess missed and irregular enzymatic cleavages, mass measurement accuracy, etc.
Getting started
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Package details |
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| Author | Vlad Petyuk with contributions from Laurent Gatto |
| Bioconductor views | ImmunoOncology MassSpectrometry Proteomics |
| Maintainer | Vlad Petyuk <petyuk@gmail.com> |
| License | Artistic-2.0 |
| Version | 1.25.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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