report_mods: Lists modification masses in the MSnID object
In vladpetyuk/MSnID: Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Parses out masses from the modification column and return them as
table with counts.
Usage
1
report_mods(object, ...)
Arguments
object
An instance of class "MSnID".
...
currently not used
Value
Counts of each modification mass listed in modification column.
Author(s)
Vladislav A Petyuk vladislav.petyuk@pnnl.gov
See Also
Examples
1
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3
4
5
6
7
msnidObj <- MSnID(".")
mzids <- system.file("extdata","phospho.mzid.gz",package="MSnID")
msnidObj <- read_mzIDs(msnidObj, mzids)
# reports the masses and number of their occurences
report_mods(msnidObj)
# clean-up cache
unlink(".Rcache", recursive=TRUE)
vladpetyuk/MSnID documentation built on June 25, 2021, 6:35 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Parses out masses from the modification column and return them as
table with counts.
Usage
1 | report_mods(object, ...)
|
Arguments
object |
An instance of class "MSnID". |
... |
currently not used |
Value
Counts of each modification mass listed in modification column.
Author(s)
Vladislav A Petyuk vladislav.petyuk@pnnl.gov
See Also
Examples
1 2 3 4 5 6 7 | msnidObj <- MSnID(".")
mzids <- system.file("extdata","phospho.mzid.gz",package="MSnID")
msnidObj <- read_mzIDs(msnidObj, mzids)
# reports the masses and number of their occurences
report_mods(msnidObj)
# clean-up cache
unlink(".Rcache", recursive=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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