ggplotheatmap-package: Compose complex heatmaps from multiple ggplots

In vlsci/ggplotheatmap: Compose complex heatmaps from multiple ggplots

Description

Provides functions for creating heatmap components and then arranging them using gtable

Details

The DESCRIPTION file: This package was not yet installed at build time.

Index: This package was not yet installed at build time.
This package provides two main functions, heatmap_components, and show_ggheatmap.

Author(s)

Ira Cooke

Maintainer: Ira Cooke <[e-mail]>

Examples

# A very simple example
#
data(pms)

hmc <- heatmap_components(x = pms)

show_ggheatmap(hmc$tile,row_dendro = hmc$rowd,col_dendro = hmc$cold)

#
# Slightly more complex example demonstrating how plots can be manipulated
# between calls to heatmap_components and show_ggheatmap
#

data(squid)
count_cols = c("Slime","VM","DM","Arms","Brain")

#
# stripcols argument appends extra columns into the tile dataframe
# these are available to add layers to tile prior to display
#
hmc <- heatmap_components(squid[,count_cols],stripdata = data.frame(iBAQ=squid[,1]))
hmc$tile + geom_point(aes(x="Slime",size=log(iBAQ)))
hm <- show_ggheatmap(hmc$tile,row_dendro = NULL,col_dendro = hmc$cold)

vlsci/ggplotheatmap documentation built on May 3, 2019, 6:16 p.m.