phylomap: Phylogenetic Stochastic Mapping

In vnminin/phylomap: Phylogenetic Stochastic Mapping

Description

phylomap performs phylogenetic stochastic mapping, with matrix exponentiation, without matrix exponentiation, and without matrix exponentiation with sparsity.

Details

Package:	phylomap
Type:	Package
Version:	1.1
Date:	2016-01-05
License: GPL-3

phylomap has seven functions that return summary statisitics of each of N sampled substitution histories. The functions are sumstatEXP, sumstatMCMC, SPARSEsumstatMCMC, sumstatMCMCbf, sumstatMCMCks, sumstatMCMCmt, and sumstatMCMCksmt.

Author(s)

Jan Irvahn, Vladimir Minin

Maintainer: <[e-mail]>

References

Irvahn, Jan, and Vladimir N. Minin. "Phylogenetic Stochastic Mapping Without Matrix Exponentiation." Journal of Computational Biology 21.9 (2014): 676-690.

vnminin/phylomap documentation built on May 3, 2019, 6:38 p.m.