rbrothers is a phylogenetic recombination detection package. Starting with aligned DNA sequences, rbrothers uses the Bayesian multiple change-point model implemented in the JAVA package DualBrothers to create posterior tree probability plots. rbrothers automates the production of a reasonable set of candidate trees and provides trace plots and autocorrelation plots that allow the user to monitor the convergence and mixing of the Markov chain Monte Carlo algorithm.
|Author||Vladimir Minin, Jan Irvahn|
|Maintainer||Vladimir Minin <[email protected]>|
|Package repository||View on GitHub|
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