plottree.db: Plots the most likely phylogenetic trees

In vnminin/rbrothers: rbrothers: multiple change-point recombination detection

Description

This function plots the most likely phylogenetic trees from a DualBrothers object.

Usage

plottree.db(x,numplot=4,makepic="FALSE",ext="png",type="unrooted",colors=NULL,threshold=0)

Arguments

x	a DualBrothers object
numplot	a positive integer, determines the maximum number of trees to plot
makepic	a string, either "FALSE" or "TRUE", if "TRUE" the plot is outputted into a .png file in the current working directory
ext	a string, either "png" or "pdf", when makepic is TRUE determines what type of file to produce
type	a string specifying the type of phylogeny to be drawn; it must be one of "phylogram", "cladogram", "fan", "unrooted", "radial" or any unambiguous abbreviation of these
colors	a vector of color names to determine the palette for plotting
threshold	posterior probability threshold, a number between 0 and 1, only those trees that attained a posterior probability greater than the number provided will be plotted

Value

Tree plots

vnminin/rbrothers documentation built on May 3, 2019, 6:38 p.m.