| breakpointCI | 95% breakpoint credible interval |
| db | db |
| db.default | db.default |
| dualbrothers | Recombination Analysis via DualBrothers |
| epprofile | EPProfile |
| extractbasename | extract the basename from an rbrothers object |
| findbreakpoints | FindBreakPoints |
| plot.db | Plot a dualbrothers object |
| plotkappa | Plot Posterior values of Kappa for a DualBrothers object |
| plotmcmc | MCMC trace plot of log likelihoods |
| plotmu | Plot Posterior values of Mu for a DualBrothers object |
| plottree.db | Plots the most likely phylogenetic trees |
| readdb | import a dualbrothers object |
| summary.db | Summary of a dualbrothers object |
| topologyprofile | TopologyProfile |
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