vodkatad/MatrixRider: Obtain total affinity and occupancies for binding site matrices on a given sequence
Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.
Getting started
Browse package contents
Package details |
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| Author | Elena Grassi |
| Bioconductor views | GeneRegulation Genetics MotifAnnotation |
| Maintainer | Elena Grassi <grassi.e@gmail.com> |
| License | GPL-3 |
| Version | 1.3.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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