Description Usage Arguments Details Examples
View source: R/addInvitedSeq.R
A function to update barcode summaries with a selected set of DNA sequences (e.g. in case of big rearrangement in barcode sequence).
1 | addInvitedSeq(pat, bc_data, dir, invited_idx = NULL, invited_bc = NULL)
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pat |
The barcode backbone pattern for matching. |
bc_data |
The data returned by the function generateSummaries(). |
dir |
The directory containing the summaries. |
invited_idx |
The list of invited sequences that missed index matching (A table with matching sequences and sample name. one sequence per line). |
invited_bc |
The list of invited sequences that missed barcode matching (one sequence per line). |
This function updates the summaries generated by generateSummaries() with a set of provided sequences.
1 | addInvitedSeq(pat, bc_data, getwd(), invited_idx, invited_bc)
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