addInvitedSeq: A function to update barcode summaries with a selected set of...

In vroh/BC32_BarSeq: Set of functions to process and analyze a BC32 sequencing run

Description

A function to update barcode summaries with a selected set of DNA sequences (e.g. in case of big rearrangement in barcode sequence).

Usage

addInvitedSeq(pat, bc_data, dir, invited_idx = NULL, invited_bc = NULL)

Arguments

pat	The barcode backbone pattern for matching.
bc_data	The data returned by the function generateSummaries().
dir	The directory containing the summaries.
invited_idx	The list of invited sequences that missed index matching (A table with matching sequences and sample name. one sequence per line).
invited_bc	The list of invited sequences that missed barcode matching (one sequence per line).

Details

This function updates the summaries generated by generateSummaries() with a set of provided sequences.

Examples

addInvitedSeq(pat, bc_data, getwd(), invited_idx, invited_bc)

vroh/BC32_BarSeq documentation built on Jan. 25, 2021, 9:24 p.m.