poolBC: A function to pool similar barcodes according to...
In vroh/BC32_BarSeq: Set of functions to process and analyze a BC32 sequencing run
Description
Usage
Arguments
Details
Examples
Description
A function to pool similar barcodes according to Damerau-Levenshtein distance.
Usage
1
Arguments
sampname
A data frame with 3 columns containing the name of each sample to
process, its file name and the expected multiplex index sequence.
dir
The directory containing the summaries.
dl
The maximum Damerau-Levenshtein distance to consider barcodes as identical and pool them together. Defaults to 12.
Details
This function updates the count summaries by pooling together similar barcodes (according to the given Damerau-Levenshtein distance).
Examples
1
vroh/BC32_BarSeq documentation built on Jan. 25, 2021, 9:24 p.m.
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Description Usage Arguments Details Examples
Description
A function to pool similar barcodes according to Damerau-Levenshtein distance.
Usage
1 |
Arguments
sampname |
A data frame with 3 columns containing the name of each sample to process, its file name and the expected multiplex index sequence. |
dir |
The directory containing the summaries. |
dl |
The maximum Damerau-Levenshtein distance to consider barcodes as identical and pool them together. Defaults to 12. |
Details
This function updates the count summaries by pooling together similar barcodes (according to the given Damerau-Levenshtein distance).
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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