mergeSummaries: A function to merge multiple count summaries into one table.

In vroh/BC32_BarSeq: Set of functions to process and analyze a BC32 sequencing run

Description

A function to merge multiple count summaries into one table.

Usage

mergeSummaries(sampname, dir, min.count = 10, cleancol = F)

Arguments

sampname	A data frame with 3 columns containing the name of each sample to process, its file name and the expected multiplex index sequence.
dir	The directory containing the summaries.
min.count	Counts below this number are replaced by zero (considered as noise). Defaults to 10.
cleancol	If true, columns that contain only zeros will be removed. Defaults to F.

Details

This function merge all count summaries in the sampname table together in one data frame. Counts below min.count are replaced by zeros.

Examples

counts <- mergeSummaries(sampname,
                         getwd(),
                         10,
                         F)

vroh/BC32_BarSeq documentation built on Jan. 25, 2021, 9:24 p.m.