| addPalette | Manually add a heatmap palette and view the currently loaded... |
| bactKymo | Creates kymographs or demographs from pixel values & cell... |
| bactmapnews | This is the development version of BactMAP |
| checkVersionCompatible | check whether your data frames are compatible with the... |
| colorsCUD | Return CUD color palette with color titles |
| combineDataframes | Function to combine data by condition (e.g. mutant vs wild... |
| createPlotlist | Function to create descriptive plots of spot localization per... |
| extr_ISBatch | Import ISBatch/Peakfitter data into R |
| extr_Meshes | Generic function to upload cell outlines from a .csv or .txt... |
| extr_Microbe | upload MicrobeJ output into R for further analysis |
| extr_Morphometrics | Upload cell outlines segmented using Morphometrics |
| extr_ObjectJ | Upload and transform ObjectJ bounding box data. |
| extr_OriginalStack | Convert original TIFF image stack used to gather spot and... |
| extr_Oufti | Function to import Oufti data. |
| extr_Spots | Generic function for extraction of spot data |
| extr_SuperSeggerCells | Convert SuperSegger cell outlines & genealogy to standard... |
| Mesh | Format of the Mesh dataframe |
| micron | Get back the unicode character for the micro-sign + m... |
| object | Object DataFrames |
| objectInBox | Connect detected objects to detected cell meshes; turn all... |
| onePerCell | Function to get a dataframe per cell out of your mesh, spots,... |
| orientCells | Orient your cells by the side in which your spots or objects... |
| perc_Division | Filter timelapse data by growth speed and whether cells... |
| pixels2um | Add and look up magnification factor "pixels2um" |
| plotCellsTime | Function to plot cell fluorescence from a TIFF over time. |
| plotObjects | Create plots similar to createPlotList using intracellular... |
| plotOverlay | Display spot- and/or object-localization of different color... |
| plotRaw | Plot TIFF, cell contours and/or spot localization on the... |
| plotTracks | Plot tracked spots and/or objects over time in 1 or 2... |
| plottreeBasic | Plot cell genealogy information as networks using ggtree. |
| prepForKymo | Prepare whole dataset for single cell kymographs. |
| Shinyspots_documentation | BactMAP: Analyze Bacterial Cell Segmentation And Fluoresence... |
| spotframe | Spot Data: dataframes describing fluorescent spot coordinates... |
| spotsInBox | Put spots in boxes |
