checkVersionCompatible: check whether your data frames are compatible with the...

In vrrenske/shinyspots: Visualization and Analysis of Bacterial Cell Segmentation and Fluorescence Data

check whether your data frames are compatible with the current version of BactMAP

Description

In the new version of BactMAP, the variables Xrotum & Yrotum are renamed to Xrot_micron and Yrot_micron. While plotting functions are adapted to both old & new variable names, it is recommended to update your old dataframes so the variable names in all your datasets are the same. Run checkVersionCompatible() to check for compatibility with the new BactMAP version & change the old variable names to the new ones.

Usage

checkVersionCompatible(oldDataFrame, returnDataFrame=TRUE)

Arguments

oldDataFrame	Any dataframe created with BactMAP of which you wish to know whether it's compatible with the current version of bactMAP.
returnDataFrame	Set this variable to FALSE if you just want to check for issues, and to TRUE if you want to get a fixed (or, if no problems are found, untouched) dataframe returned.

Details

The function standardly fixes found compatibility problems (between version 0.1.0.0 and 0.1.0.1, see bactmapnews ) and returns the fixed dataframe (or the same dataframe if no problems are found). If you just want to check for issues, set returnDataFrame to FALSE.

Value

If returnDataFrame is set to TRUE, a dataframe with the correct variable names is returned.

Author(s)

Renske van Raaphorst

Examples

## Not run: 
#using TurnedCell4 dataframe from the example dataset (\url{https://veeninglab.com/f/example_datasets.zip})


checkVersionCompatible(TurnedCell4, returnDataFrame=FALSE)

## End(Not run)

vrrenske/shinyspots documentation built on Oct. 28, 2023, 12:26 p.m.