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In vrrenske/shinyspots: Visualization and Analysis of Bacterial Cell Segmentation and Fluorescence Data
bactMAP R Documentation
BactMAP: Analyze Bacterial Cell Segmentation And Fluoresence Data
Description
version 0.1.0.1
Package to upload and uniformally analyze (bacterial) cell segmentation and fluorescence data, making it possible to combine output from different analysis tools into one or more datasets. Vizualize the data using ggplot2, statistically compare datasets and automatically produce a summary of the data.
Note
Compatible software outputs:
*MicrobeJ<www.microbej.com>
*ObjectJ<https://sils.fnwi.uva.nl/bcb/objectj/>
*ISBatch<http://singlemolecule.github.io/iSBatch/>
*Oufti<www.oufti.org>
*MicrobeTracker<www.microbetracker.org>
*Morphometrics<https://simtk.org/projects/morphometrics>
*SuperSegger<https://github.com/wiggins-lab/SuperSegger/wiki
Author(s)
Renske van Raaphorst<renske.vanraaphorst@unil.ch>
University of Lausanne
References
van Raaphorst R, Kjos M, Veening JW (2019)
van Raaphorst R*, Kjos M*, Veening JW (2017) Chromosome segregation drives division site selection in Streptococcus pneumoniae. Proc Natl Acad Sci U S A. 114(29):E5959-E5968.
vrrenske/shinyspots documentation built on Oct. 28, 2023, 12:26 p.m.
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| bactMAP | R Documentation |
BactMAP: Analyze Bacterial Cell Segmentation And Fluoresence Data
Description
version 0.1.0.1
Package to upload and uniformally analyze (bacterial) cell segmentation and fluorescence data, making it possible to combine output from different analysis tools into one or more datasets. Vizualize the data using ggplot2, statistically compare datasets and automatically produce a summary of the data.
Note
Compatible software outputs:
*MicrobeJ<www.microbej.com> *ObjectJ<https://sils.fnwi.uva.nl/bcb/objectj/> *ISBatch<http://singlemolecule.github.io/iSBatch/> *Oufti<www.oufti.org> *MicrobeTracker<www.microbetracker.org> *Morphometrics<https://simtk.org/projects/morphometrics> *SuperSegger<https://github.com/wiggins-lab/SuperSegger/wiki
Author(s)
Renske van Raaphorst<renske.vanraaphorst@unil.ch> University of Lausanne
References
van Raaphorst R, Kjos M, Veening JW (2019)
van Raaphorst R*, Kjos M*, Veening JW (2017) Chromosome segregation drives division site selection in Streptococcus pneumoniae. Proc Natl Acad Sci U S A. 114(29):E5959-E5968.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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