API for vrrenske/shinyspots
Visualization and Analysis of Bacterial Cell Segmentation and Fluorescence Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| BACTMAP | Man page |
| ISBatch | Man page |
| LWplot | Source code |
| LimDum | Source code |
| Morphometrics | Man page |
| Oufti | Man page |
| OuftiCSV | Man page |
| Pixel2um | Man page |
| Pixels2um | Man page |
| Spot Data | Man page |
| addColumn | Source code |
| addPalette | Man page Source code |
| addPixels2um | Man page Source code |
| addcellnumcell | Source code |
| addcellnumframe | Source code |
| allplot | Source code |
| bactKymo | Man page |
| bactMAP | Man page |
| bactMAP-package | Man page |
| bactmapnews | Man page |
| bindallcellsandmeshes | Source code |
| celmask | Source code |
| centrefun | Source code |
| chainTracer | Man page |
| changecols | Source code |
| changeres | Source code |
| checkVersionCompatible | Man page Source code |
| choosecolumns | Source code |
| colorchoiceplot | Source code |
| colorsCUD | Man page Source code |
| combineDataframes | Man page Source code |
| coplot | Source code |
| createPlotList | Man page Source code |
| densityplot | Source code |
| extrMorphCell | Source code |
| extr_ISBatch | Man page Source code |
| extr_Meshes | Man page Source code |
| extr_MicrobeJ | Man page Source code |
| extr_MicrobeJMESH | Source code |
| extr_MicrobeJSpots | Source code |
| extr_Morphometrics | Man page Source code |
| extr_Morphometrics_cellList | Source code |
| extr_ObjectJ | Man page Source code |
| extr_Original | Man page |
| extr_OriginalCells | Man page Source code |
| extr_OriginalStack | Man page Source code |
| extr_Oufti | Man page Source code |
| extr_OuftiCSV | Man page Source code |
| extr_OuftiCellList | Source code |
| extr_OuftiMat | Source code |
| extr_OuftiSpots | Source code |
| extr_Spots | Man page Source code |
| extr_SuperSegger | Man page |
| extr_SuperSeggerCells | Man page Source code |
| extr_SuperSeggerClist | Man page Source code |
| flipallcells | Source code |
| getFilesIlastik | Source code |
| getPalette | Man page Source code |
| getPixels2um | Man page Source code |
| getSpotsInBox | Source code |
| getallmasks | Source code |
| getallmaskstime | Source code |
| getphylolist_SupSeg | Source code |
| getpointsaround | Source code |
| heatmap | Source code |
| makePlotListSummary_1 | Source code |
| makePlotListSummary_2 | Source code |
| make_Axis | Source code |
| mark_Division | Source code |
| mark_Percentage | Source code |
| mergeframes | Source code |
| mesh | Man page |
| mesh1Fun | Source code |
| meshTurn | Source code |
| micron | Man page Source code |
| midobject | Source code |
| object | Man page |
| objectInBox | Man page Source code |
| onePerCell | Man page Source code |
| orientCells | Man page Source code |
| pal2Default | Man page Source code |
| peakfitter | Man page |
| perObject | Source code |
| perRowObject | Source code |
| perTable | Source code |
| perc_Division | Man page Source code |
| pinping | Source code |
| pipperframe | Source code |
| pixel2um | Man page |
| pixels2um | Man page |
| plotCellsTime | Man page Source code |
| plotObjects | Man page Source code |
| plotOverlay | Man page Source code |
| plotRaw | Man page |
| plotTracks | Man page Source code |
| plotTreeBasic | Man page Source code |
| plot_GrowthTime | Source code |
| plot_avGrowth | Source code |
| plotcellsframelist | Source code |
| polyPerFrameClass | Source code |
| prepForKymo | Man page |
| readallsegcells | Source code |
| returnCommonColumn | Source code |
| showCurrentPalettes | Man page Source code |
| spotMR | Source code |
| spotframe | Man page |
| spotrExtractMorphMESH | Source code |
| spotrExtractSpotsObjectJ | Source code |
| spotrXYMESH | Source code |
| spots | Man page |
| spotsInBox | Man page Source code |
| spots_relative | Man page |
| sprOuftiM | Source code |
| sprOuftimesh | Source code |
| sprOuftiobject2 | Source code |
| sprOuftipickfile | Source code |
| sprOuftispot | Source code |
| superfun | Source code |
| takeObjectCentre | Source code |
| turnEach | Source code |
| turncell | Source code |
| turnraws | Source code |
| upperdir | Source code |
