rnbtn_intersect_effects: rnbtn_intersect_effects combines results from the total and...
In vsarsani/rnbtn: Regularized nested negative binomial model with local false discovery for Tn-seq Data
View source: R/rnbtn_intersect_effects.R
rnbtn_intersect_effects R Documentation
rnbtn_intersect_effects combines results from the total and unique counts and produces intersected .csv files
with specified fdr cutoffs.It also produces intersection plots
Description
rnbtn_intersect_effects combines results from the total and unique counts and produces intersected .csv files
with specified fdr cutoffs.It also produces intersection plots
Usage
rnbtn_intersect_effects(TC_files, UC_files, path, fdrcutoff = 0.05)
Arguments
TC_files
: A list of Total counts files from rnbtn_fdr_effects along with full path.
Each file should have columns of fdr,log2_coefficient,locus_tag,mean,controlmean
UC_files
: A list of Unique counts files from rnbtn_fdr_effects along with full path.
Each file should have fdr,log2_coefficient,locus_tag,mean,controlmean
path:
A path to write output files.
fdrcutoff:
A cutoff for significant locus_tags.Default is 0.05
vsarsani/rnbtn documentation built on May 13, 2022, 1:45 p.m.
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View source: R/rnbtn_intersect_effects.R
| rnbtn_intersect_effects | R Documentation |
rnbtn_intersect_effects combines results from the total and unique counts and produces intersected .csv files with specified fdr cutoffs.It also produces intersection plots
Description
rnbtn_intersect_effects combines results from the total and unique counts and produces intersected .csv files with specified fdr cutoffs.It also produces intersection plots
Usage
rnbtn_intersect_effects(TC_files, UC_files, path, fdrcutoff = 0.05)
Arguments
TC_files |
: A list of Total counts files from rnbtn_fdr_effects along with full path. Each file should have columns of fdr,log2_coefficient,locus_tag,mean,controlmean |
UC_files |
: A list of Unique counts files from rnbtn_fdr_effects along with full path. Each file should have fdr,log2_coefficient,locus_tag,mean,controlmean |
path: |
A path to write output files. |
fdrcutoff: |
A cutoff for significant locus_tags.Default is 0.05 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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