rnbtn_simulate_data: rnbtn_simulate_data simulates the transposon count data for...

In vsarsani/rnbtn: Regularized nested negative binomial model with local false discovery for Tn-seq Data

rnbtn_simulate_data simulates the transposon count data for Total counts and Unique Counts in a nested experimental structure of strain/condition/slevel with replicates. It simulates 4000 locus_tags for each replicate.

Description

rnbtn_simulate_data simulates the transposon count data for Total counts and Unique Counts in a nested experimental structure of strain/condition/slevel with replicates. It simulates 4000 locus_tags for each replicate.

Usage

rnbtn_simulate_data(n_strain, n_condition, n_slevel, n_rep)

Arguments

n_rep	= Number of replicates for each stress level
n_strain=	Number of strains or genetic backgrounds to simulate
n_condition=	Number of experimental/environmental conditions to simulate for each strain
n_slevel=	Number of stress levels to simulate for each condition

Examples

rnbtn_simulate_data(n_strain=2,n_condition=2,n_slevel=2,n_rep=2)

vsarsani/rnbtn documentation built on May 13, 2022, 1:45 p.m.