Files in vsbuffalo/qrqc
Quick Read Quality Control
.Rbuildignore
.gitignore
ChangeLog
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/ggplotting-methods.R
R/knitr-methods.R
R/main.R
R/plotting-methods.R
R/report-methods.R
R/show-methods.R
R/utils.R
README.md
TODO
inst/NEWS
inst/extdata/fasta-report-template.html
inst/extdata/fastq-report-template.html
inst/extdata/iupac.fastq
inst/extdata/knitr-report-template.Rhtml
inst/extdata/knitr-report-template.Rnw
inst/extdata/probes.fastq
inst/extdata/random.fasta
inst/extdata/test-contam.fastq
inst/extdata/test-trimmed.fastq
inst/extdata/test.fasta
inst/extdata/test.fastq
man/FASTASummary-class.Rd
man/FASTQSummary-class.Rd
man/SequenceSummary-class.Rd
man/basePlot-methods.Rd
man/calcKL.Rd
man/gcPlot-methods.Rd
man/geom_qlinerange.Rd
man/getBase-methods.Rd
man/getBaseProp-methods.Rd
man/getGC-methods.Rd
man/getKmer-methods.Rd
man/getMCQual-methods.Rd
man/getQual-methods.Rd
man/getSeqlen-methods.Rd
man/kmerEntropyPlot.Rd
man/kmerKLPlot.Rd
man/list2df.Rd
man/makeReport.Rd
man/plotBases.Rd
man/plotGC.Rd
man/plotQuals.Rd
man/plotSeqLengths.Rd
man/qualPlot-methods.Rd
man/readSeqFile.Rd
man/scale_color_dna.Rd
man/scale_color_iupac.Rd
man/seqlenPlot-methods.Rd
src/Makevars
src/Makevars.win
src/R_init_io.c
src/io.c
src/io.h
tests/test-functions.R
vignettes/qrqc.Rnw
vignettes/qrqc.pdf
