plotGC: Plot per Base GC Content by Position

In vsbuffalo/qrqc: Quick Read Quality Control

Description

plotGC plots the GC proportion by position.

Usage

  plotGC(obj)

Arguments

obj	an S4 object of class that inherits from SequenceSummary (either FASTASummary or FASTQSummary) from readSeqFile.

Author(s)

Vince Buffalo <[e-mail]>

See Also

gcPlot

Examples

## Not run: 
  ## Load a FASTQ file, with sequence hashing.
  s.fastq <- readSeqFile(system.file('extdata', 'test.fastq', package='qrqc'))

  ## Plot Qualities
  plotGC(s.fastq)

## End(Not run)

vsbuffalo/qrqc documentation built on May 3, 2019, 7:07 p.m.