makeReport: Make an HTML report from a FASTASummary of FASTQSummary...

In vsbuffalo/qrqc: Quick Read Quality Control

Description

makeReport takes a FASTQSummary or FASTASummary object, creates an HTML report, and writes it to a file within a directory. The directory naming is incremental so past reports will not be overwritten.

Usage

  makeReport(x, outputDir=".")

Arguments

x	an object that is either FASTQSummary or FASTASummary.
outputDir	an optional character argument to to indicate the report output directory. By default, the current directory.

Author(s)

Vince Buffalo <[e-mail]>

Examples

  ## Load a FASTQ file
  s.fastq <- readSeqFile(system.file('extdata', 'test.fastq', package='qrqc'))

  ## Make and save a report
  makeReport(s.fastq)

vsbuffalo/qrqc documentation built on May 3, 2019, 7:07 p.m.