calcConnectivityMatrixAlt: Calculate a connectivity matrix dataframe classified by...

In wStockhausen/rDisMELS: Basic functions for dealing with DisMELS IBM model output

Calculate a connectivity matrix dataframe classified by start/end zones

Description

Function to calculate a connectivity matrix dataframe individuals classified by start/end zones.

Usage

calcConnectivityMatrixAlt(
  dfr_isezs,
  endLHSs = c("C1F", "C1M"),
  startZones = c(1:8),
  endZones = c(1:18)
)

Arguments

dfr_isezs	- dataframe with individuals classified by start/end zones
endLHSs	- vector of name(s) of ending life stage(s) for connectivity matrix
startZones	- vector of all starting zone id's (integers)
endZones	- vector of all ending zone id's (integers)

Details

Calculates the connectivity matrix for a model run based on individuals previously classified by start and end zones (e.g., from indivsInfo_ExtractStartEndByStage or indivsInfo_ExtractStartEnd, followed by indivsInfo_AssignZones).

This function provides an alternative path to calculating the same connectivity matrices as calcConnectivityMatrix.

Value

connectivity matrix as a dataframe

wStockhausen/rDisMELS documentation built on March 27, 2022, 1 a.m.