indivsInfo_ExtractStart: Extract info on individuals at start of initial life stage

In wStockhausen/rDisMELS: Basic functions for dealing with DisMELS IBM model output

Extract info on individuals at start of initial life stage

Description

Function to extract info on individuals at start of initial life stage.

Usage

indivsInfo_ExtractStart(
  sf_indivs,
  addVars = "",
  hasSuccessful = FALSE,
  verbose = FALSE
)

Arguments

sf_indivs	- sf dataframe for the initial life stage from call to indivsInfo_ReorderResults
addVars	- character vector with names of additional (non-default) variables to extract
hasSuccessful	- flag indicating that sfs_indivs include a "successful" column
verbose	- flag to print debugging info

Details

The input sf dataframe should be the one returned by indivsInfo_ReorderResults for the initial life stage. For each individual, the initial location is identified by the record when startTime == time.

Value

sf dataframe with columns:

• startTime

• origID - original (starting) individual ID

• startLHS - starting life stage

• startGridCell - ID of starting ROMS grid cell

• startLon - starting longitude

• startLat - starting latitude

• startDepth - starting depth (m)

• startBathym - bathymetric depth (m) at starting location

• startAge - starting depth

• startNum - starting depth

• startTemp - starting temperature

• start..AddVars - columns corresponding to additional variables (names converted to camel case)

• successful - flag indicating "success" (TRUE) or failure (FALSE) (e.g., settlement) [if hasSuccessful]=TRUE

• startGeom - starting 2d location as SF_POINT

Note

If additional variables (addVars) are requested in the output dataframe, the names are prepended by "end" and converted to camel case.

wStockhausen/rDisMELS documentation built on March 27, 2022, 1 a.m.