indivsInfo_ExtractEnd: Extract info by individual at end of life or model run

In wStockhausen/rDisMELS: Basic functions for dealing with DisMELS IBM model output

Extract info by individual at end of life or model run

Description

Function to extract info by individual at end of life or model run.

Usage

indivsInfo_ExtractEnd(sf_EndByStage)

Arguments

sf_EndByStage

- sf dataframe returned by indivsInfo_ExtractEndByStage

Details

The input sf dataframe should be the output of indivsInfo_ExtractEndByStage.

For each unique individual, the end of the model run or death is identified by the record where age==max(age). "Unique" individuals are determined by eliminating original individuals which resulted in more than one final individual (e.g., when metamorphosis results in more than one individual).

Value

sf dataframe with columns:

• startTime

• origID - original (starting) individual ID

• endTime - ending time

• endID - ending individual ID

• endLHS - ending life stage

• endGridCell - ID of ending ROMS grid cell

• endLon - ending longitude

• endLat - ending latitude

• endDepth - ending depth (m)

• endBathym - bathymetric depth (m) at ending location

• endAge - ending age(d)

• endNum - ending number

• successful - flag indicating "success" (TRUE) or failure (FALSE) (e.g., settlement) [if column in sf_EndByStage]

• endGeom - ending 2d location as SF_POINT

wStockhausen/rDisMELS documentation built on March 27, 2022, 1 a.m.