make_td_settings_list: Make a list with parameter settings commands for treeducken
In wadedismukes/treeduckenTools: treeduckenTools

Description Usage Arguments Value Examples

View source: R/settings_handler.R

Make a list with parameter settings commands for treeducken

1
2
3

make_td_settings_list(sbr, sdr, trr = 0, gbr = 0, gdr = 0, nt,
  ipp = 1, ne = 1, reps, nl = 1, ng = 1, sout = 0, sd1 = 0,
  sd2 = 0)

`sbr`	species birth rate (real number)
`sdr`	species death rate (real number)
`trr`	gene transfer rate (real number)
`gbr`	gene birth rate (real number)
`gdr`	gene death rate (real number)
`nt`	number of taxa (integer)
`ipp`	individuals per population (integer)
`ne`	population size (integer)
`reps`	replicate species trees (integer)
`nl`	number of loci (integer)
`ng`	number of genes (integer)
`sout`	standard out (bool)
`sd1`	RNG seed (integer)
`sd2`	RNG seed (integer)

A list containining all parameters

sett_list <- make_td_settings_list(sbr = 0.1,
                                   sdr = 0.05,
                                   trr = 0.01,
                                   gbr =  0.025,
                                   gdr = 0,
                                   nt = 10,
                                   reps = 10)