Description Usage Arguments Value Examples
View source: R/write_settings_file.R
Make a list with parameter settings commands for treeducken
1 2 3 | make_treeducken_settings_list(sbr, sdr, trr = 0, gbr = 0, gdr = 0,
nt, ipp = 1, ne = 1, reps, nl = 1, ng = 1, sout = 0, sd1 = 0,
sd2 = 0)
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sbr |
species birth rate (real number) |
sdr |
species death rate (real number) |
trr |
gene transfer rate (real number) |
gbr |
gene birth rate (real number) |
gdr |
gene death rate (real number) |
nt |
number of taxa (integer) |
ipp |
individuals per population (integer) |
ne |
population size (integer) |
reps |
replicate species trees (integer) |
nl |
number of loci (integer) |
ng |
number of genes (integer) |
sout |
standard out (bool) |
sd1 |
RNG seed (integer) |
sd2 |
RNG seed (integer) |
A list containining all parameters
1 | make_treeducken_settings_list(0.1, 0.05, 0.01, 0.025, 10, reps = 10)
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