waldronlab/CNVRanger: Summarization and expression/phenotype association of CNV ranges
The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.
Getting started
Browse package contents
Package details |
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| Author | Ludwig Geistlinger [aut, cre], Vinicius Henrique da Silva [aut], Marcel Ramos [ctb], Levi Waldron [ctb] |
| Bioconductor views | CopyNumberVariation DifferentialExpression GeneExpression GenomeWideAssociation GenomicVariation Microarray RNASeq SNP |
| Maintainer | Ludwig Geistlinger <ludwig.geistlinger@gmail.com> |
| License | Artistic-2.0 |
| Version | 1.23.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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