API for waldronlab/GSEABenchmarkeR
Reproducible GSEA Benchmarking
| Global functions | |
|---|---|
| .barplotRelScores | Source code |
| .compPerm | Source code |
| .compRankDistrib | Source code |
| .deployScore | Source code |
| .downloadGSE62944 | Source code |
| .ea | Source code |
| .eaPkgs | Source code |
| .evalAUC | Source code |
| .evalCor | Source code |
| .evalTypeI | Source code |
| .execEA | Source code |
| .execPermBlocks | Source code |
| .extractColData | Source code |
| .filterByCPM | Source code |
| .fractDE | Source code |
| .getGeo2KeggIds | Source code |
| .getPermMat | Source code |
| .getResourceFromCache | Source code |
| .getSampleType | Source code |
| .groupSE | Source code |
| .iter | Source code |
| .loadEDataFromFile | Source code |
| .loadGEO2KEGG | Source code |
| .loadTCGA | Source code |
| .methods2list | Source code |
| .optScore | Source code |
| .pairSE | Source code |
| .plotOverallRankDistrib | Source code |
| .postprocScores | Source code |
| .randScore | Source code |
| .readResultFile | Source code |
| .readResultsOfMethod | Source code |
| .rel2rel | Source code |
| .relScore | Source code |
| .retrieveFromCTD | Source code |
| .retrieveGSE62944FromEHub | Source code |
| .save2file | Source code |
| .shuffleD2D | Source code |
| .splitByCancerType | Source code |
| benchmark | Source code |
| bpPlot | Man page Source code |
| cacheResource | Man page Source code |
| compOpt | Man page Source code |
| compRand | Man page Source code |
| evalNrSets | Man page Source code |
| evalNrSigSets | Man page Source code |
| evalRandomGS | Man page Source code |
| evalRelevance | Man page Source code |
| evalTypeIError | Man page Source code |
| loadEData | Man page Source code |
| maPreproc | Man page Source code |
| metaFC | Man page Source code |
| plotDEDistribution | Man page Source code |
| plotGSSizeRobustness | Source code |
| plotNrSamples | Man page Source code |
| plotTypeIError | Source code |
| readDataId2diseaseCodeMap | Man page Source code |
| readResults | Man page Source code |
| runDE | Man page Source code |
| runEA | Man page Source code |
| writeDE | Man page Source code |
