R/constants.R
In waldronlab/bugsigdbr: R-side access to published microbial signatures from BugSigDB
# ORDINARY
TAX.LEVELS <- c("kingdom", "phylum", "class", "order", "family", "genus",
"species", "strain")
MPA.TAX.LEVELS <- c(substring(TAX.LEVELS[-8], 1, 1), "t")
names(MPA.TAX.LEVELS) <- TAX.LEVELS
MPA.REGEXP <- "^[kpcofgst]__"
# URLs
EFO.OBO.URL <- "https://www.ebi.ac.uk/efo/efo.obo"
UBERON.OBO.URL <- "http://ontologies.berkeleybop.org/uberon.obo"
waldronlab/bugsigdbr documentation built on May 2, 2024, 1:21 p.m.
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# ORDINARY
TAX.LEVELS <- c("kingdom", "phylum", "class", "order", "family", "genus",
"species", "strain")
MPA.TAX.LEVELS <- c(substring(TAX.LEVELS[-8], 1, 1), "t")
names(MPA.TAX.LEVELS) <- TAX.LEVELS
MPA.REGEXP <- "^[kpcofgst]__"
# URLs
EFO.OBO.URL <- "https://www.ebi.ac.uk/efo/efo.obo"
UBERON.OBO.URL <- "http://ontologies.berkeleybop.org/uberon.obo"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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