walter-ca/Scale4C: Scale4C: an R/Bioconductor package for scale-space transformation of 4C-seq data
Version 0.99.5

Scale4C is an R/Bioconductor package for scale-space transformation and visualization of 4C-seq data. The scale-space transformation is a multi-scale visualization technique to transform a 2D signal (e.g. 4C-seq reads on a genomic interval of choice) into a tesselation in the scale space (2D, genomic position x scale factor) by applying different smoothing kernels (Gauss, with increasing sigma). This transformation allows for explorative analysis and comparisons of the data's structure with other samples.

Getting started

Package details

AuthorCarolin Walter
Bioconductor views Coverage DataImport QualityControl Sequencing Visualization
MaintainerCarolin Walter <[email protected]>
LicenseLGPL-3
Version0.99.5
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("walter-ca/Scale4C")
walter-ca/Scale4C documentation built on June 7, 2017, 1 p.m.