gene.enh.desc: Gene-Enhancer descriptives
In wangk4/chipenrich.data: Companion package to chipenrich
Description
A data frame with gene-level descriptions of enhancer properties using enhancers.dnase_thurman.0. Used in the adjustment of proximity test to enhancers.
- gene_id
The Entrez ID for the a gene
- avg_denh_emp
The empirical average distance to an enhancer from 90 ENCODE ChIP-seq datasets. This is used as the adjustment.
- num_enh
The number of enhancers assigned to the gene, defined by closest gene TSS
- avgdenh
The theoretical average distance to an enhancer assuming every base pair on the genome is equally likely to have a peak binding.
Usage
1
Format
An object of class data.frame with 21600 rows and 4 columns.
wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.
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Description
A data frame with gene-level descriptions of enhancer properties using enhancers.dnase_thurman.0. Used in the adjustment of proximity test to enhancers.
- gene_id
The Entrez ID for the a gene
- avg_denh_emp
The empirical average distance to an enhancer from 90 ENCODE ChIP-seq datasets. This is used as the adjustment.
- num_enh
The number of enhancers assigned to the gene, defined by closest gene TSS
- avgdenh
The theoretical average distance to an enhancer assuming every base pair on the genome is equally likely to have a peak binding.
Usage
1 |
Format
An object of class data.frame with 21600 rows and 4 columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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