geneset.reactome.dre: geneset.reactome.dre genesets for Danio rerio
In wangk4/chipenrich.data: Companion package to chipenrich
Description
Usage
Format
Source
Description
Reactome genesets for Danio rerio. All genesets are required to have >= 10 Entrez IDs.
Built on Tue Mar 28 13:03:21 2017.
Usage
1
Format
A GeneSet object with the following slots:
- type
A character indicating the type of genesets, e.g. Reactome.
- dburl
A character of the URL of the database underlying the genesets.
- organism
A character of the organism, e.g. Homo sapiens.
- set.gene
An environment containing a list whose keys are database specific accessions (e.g. R-HSA-109688), and whose elements are character vectors of Entrez Gene IDs.
- all.genes
A character vector of all the Entrez Gene IDs contained over all the genesets in this type.
- set.name
An environment containing a list whose keys are database specific accessions, and whose elements are human readable geneset names.
Source
http://www.reactome.org/download/current/NCBI2Reactome_All_Levels.txt downloaded on 2017-03-19
wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.
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Description Usage Format Source
Description
Reactome genesets for Danio rerio. All genesets are required to have >= 10 Entrez IDs. Built on Tue Mar 28 13:03:21 2017.
Usage
1 |
Format
A GeneSet object with the following slots:
- type
A
characterindicating the type of genesets, e.g. Reactome.- dburl
A
characterof the URL of the database underlying the genesets.- organism
A
characterof the organism, e.g. Homo sapiens.- set.gene
An
environmentcontaining alistwhose keys are database specific accessions (e.g. R-HSA-109688), and whose elements arecharactervectors of Entrez Gene IDs.- all.genes
A
charactervector of all the Entrez Gene IDs contained over all the genesets in thistype.- set.name
An
environmentcontaining alistwhose keys are database specific accessions, and whose elements are human readable geneset names.
Source
http://www.reactome.org/download/current/NCBI2Reactome_All_Levels.txt downloaded on 2017-03-19
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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