geneset.biocarta_pathway.hsa: geneset.biocarta_pathway.hsa genesets for BioCarta

In wangk4/chipenrich.data: Companion package to chipenrich

Description

BioCarta (biocarta_pathway) genesets. All genesets are required to have >= 10 Entrez IDs. Built on Mon Oct 16 18:46:04 2017.

Usage

geneset.biocarta_pathway.hsa

Format

A GeneSet object with the following slots:

type

A character indicating the type of genesets, e.g. GOBP.

dburl

A character of the URL of the database underlying the genesets.

organism

A character of the organism, e.g. Homo sapiens.

set.gene

An environment containing a list whose keys are database specific accessions (e.g. GO IDs for GO terms), and whose elements are character vectors of Entrez Gene IDs.

all.genes

A character vector of all the Entrez Gene IDs contained over all the genesets in this type.

set.name

An environment containing a list whose keys are database specific accessions, and whose elements are human readable geneset names.

Source

https://cgap.nci.nih.gov/Pathways/BioCarta_Pathways

wangk4/chipenrich.data documentation built on June 19, 2020, 12:18 a.m.