DeterminePloidy: Determine Ploidy
In wbooker/PloidyPal: Package for analysis of polyploid datasets
Description
Usage
Details
Value
Author(s)
View source: R/DeterminePloidy.r
View source: R/PloidyPal.R
Description
Graphs individuals for agreeing informative sites by ploidy
Usage
1
DeterminePloidy(meanThresh, sdThresh, inds)
Details
meanThresh is your plus minus threshold (between 0 and 1) multiplier to mean allelic distance for comparison of informative loci. Default is 0.75
sdThresh is your plus minus threshold (between 0 and 1) multiplier to mean tetraploid standard deviation for comparison of informative loci. Default is 0.8
inds is number of informative loci to be considered ranked in descending order. Default is all informative loci
Value
badDip is a matrix of previously assumed diploids that are potentially mislabeled and their number of agreeing sites
badTet is similar for tetraploids
unknowns is a similar matrix for unknown individuals
infMat is a matrix of all individuals with ploidy level and number of informative sites
Author(s)
William Booker, FSU
wbooker/PloidyPal documentation built on May 4, 2019, 2 a.m.
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Description Usage Details Value Author(s)
View source: R/DeterminePloidy.r View source: R/PloidyPal.R
Description
Graphs individuals for agreeing informative sites by ploidy
Usage
1 | DeterminePloidy(meanThresh, sdThresh, inds)
|
Details
meanThresh is your plus minus threshold (between 0 and 1) multiplier to mean allelic distance for comparison of informative loci. Default is 0.75
sdThresh is your plus minus threshold (between 0 and 1) multiplier to mean tetraploid standard deviation for comparison of informative loci. Default is 0.8
inds is number of informative loci to be considered ranked in descending order. Default is all informative loci
Value
badDip is a matrix of previously assumed diploids that are potentially mislabeled and their number of agreeing sites
badTet is similar for tetraploids
unknowns is a similar matrix for unknown individuals
infMat is a matrix of all individuals with ploidy level and number of informative sites
Author(s)
William Booker, FSU
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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