SummaryFromFiles: Get Summary of Allele Info from Files

In wbooker/PloidyPal: Package for analysis of polyploid datasets

Description

Gathers and summarizes allelic distance info from all _allelesFromPost_4_diffs.txt files and summarizes them into a few tables. One is allDistancesMat, which is a locus by individual matrix with the mean of the two smallest allelic distances per individual per locus.

Second is allMat which is a line by line summary of the same information

Third is alleleMat, which is a line by line summary of the other 4 allelic distances.

—All of these files are stored globally for use as well as written to .csv files in a created /PloidyRFiles directory.

Note

SummaryFromFiles(file) The filepath is to a paramfile .csv find a template and example at https://github.com/wbooker/PloidyPal

Author(s)

William Booker, FSU

wbooker/PloidyPal documentation built on May 4, 2019, 2 a.m.