FindInformativeLoci: Find Informative Loci
In wbooker/PloidyPal: Package for analysis of polyploid datasets

ses the info from CheckPloidy() to find which loci are informative based on some previously known individuals.

1	FindInformativeLoci(outlierThresh, numOutliers, informativeThresh)

`outlierThresh`	Threshold for what allelic distance constitues an outlier
`numOutliers`	number of outliers allowed per locus
`informativeThresh`	Distance between average tetraploid vs diploid that makes a loci count as informative

CutInfs takes a number and shortens the informative loci to that number. UncutInfs undoes that process

cutMat is a sorted matrix of informative loci and their distance differences.

William Booker

wbooker/PloidyPal documentation built on May 4, 2019, 2 a.m.

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README.md

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