API for weililab/scMAGeCK
Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
| Global functions | |
|---|---|
| KO_eff | Source code |
| assign_cell_identity | Man page Source code |
| call_rra | Source code |
| colorado | Source code |
| dis_grna | Source code |
| featurePlot | Man page Source code |
| frame2indmatrix | Source code |
| get_exp_cor_frame | Source code |
| get_rank_tables | Source code |
| get_rank_tables_from_rra | Source code |
| get_sc_signature | Source code |
| getscaledata | Source code |
| getsigmat | Source code |
| getsigresult | Source code |
| getsolvedmatrix | Source code |
| getsolvedmatrix_with_permutation_cell_label | Source code |
| guidematrix_to_triplet | Man page Source code |
| obj_func | Source code |
| obj_funct_d | Source code |
| plot_gi_genes | Source code |
| plot_single_genes | Source code |
| pre_processRDS | Man page Source code |
| prepare_matrix_for_pair_reg | Source code |
| prepare_matrix_for_pair_reg_indmat | Source code |
| rcpp_hello_world | Source code |
| read_gmt_file | Source code |
| scMAGeCK-package | Man page |
| scmageck | Man page |
| scmageck_best_lambda | Man page Source code |
| scmageck_correct_bg_exp | Source code |
| scmageck_eff_estimate | Man page Source code |
| scmageck_lr | Man page Source code |
| scmageck_optim_core | Source code |
| scmageck_rra | Man page Source code |
| sel_lr | Source code |
| sel_rra | Source code |
| selectPlot | Man page Source code |
| select_target_gene | Source code |
| single_gene_matrix_regression | Source code |
| violin_plot | Source code |
