Files in weililab/scMAGeCK

Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data

DESCRIPTION

NAMESPACE

R/KO_eff.R R/RcppExports.R R/assign_cell_identity.R R/colorado.R R/dis_grna.R R/featurePlot.R R/frame2indmatrix.R R/get_exp_cor_frame.R R/get_rank_tables.R R/get_rank_tables_from_rra.R R/get_sc_signature.R R/getscaledata.R R/getsigmat.R R/getsigresult.R R/getsolvedmatrix.R R/getsolvedmatrix_with_permutation_cell_label.R R/guidematrix_to_triplet.R R/obj_function.R R/obj_function_d.R R/plot_gi_genes.R R/plot_single_genes.R R/pre_processRDS.R R/prepare_matrix_for_pair_reg.R R/prepare_matrix_for_pair_reg_indmat.R R/read_gmt_file.R R/scmageck_best_lambda.R R/scmageck_correct_bg_exp.R R/scmageck_eff_estimate.R R/scmageck_lr.R R/scmageck_optim_core.R R/scmageck_rra.R R/sel_lr.R R/sel_rra.R R/selectPlot.R R/select_target_gene.R R/single_gene_matrix_regression.R R/violin_plot.R README.md inst/doc/scMAGeCK.R inst/doc/scMAGeCK.Rmd

inst/doc/scMAGeCK.html

inst/extdata/barcode_rec.txt

inst/extdata/singles_dox_mki67_v3.RDS

inst/extdata/test_symbols.gmt.txt

man/assign_cell_identity.Rd man/featurePlot.Rd man/guidematrix_to_triplet.Rd man/pre_processRDS.Rd man/scmageck-package.Rd man/scmageck_best_lambda.Rd man/scmageck_eff_estimate.Rd man/scmageck_lr.Rd man/scmageck_rra.Rd man/selectPlot.Rd

src/RRA.cpp

src/RRA.h

src/RcppExports.cpp

src/classdef.h

src/fileio.cpp

src/fileio.h

src/math_api.cpp

src/math_api.h

src/rcpp_interface.cpp

src/rngs.cpp

src/rngs.h

src/rvgs.cpp

src/rvgs.h

src/words.cpp

src/words.h

vignettes/scMAGeCK.Rmd

vignettes/scMAGeCK.html

weililab/scMAGeCK documentation built on Dec. 3, 2023, 11:18 p.m.