Files in weililab/scMAGeCK
Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
DESCRIPTION
NAMESPACE
R/KO_eff.R
R/RcppExports.R
R/assign_cell_identity.R
R/colorado.R
R/dis_grna.R
R/featurePlot.R
R/frame2indmatrix.R
R/get_exp_cor_frame.R
R/get_rank_tables.R
R/get_rank_tables_from_rra.R
R/get_sc_signature.R
R/getscaledata.R
R/getsigmat.R
R/getsigresult.R
R/getsolvedmatrix.R
R/getsolvedmatrix_with_permutation_cell_label.R
R/guidematrix_to_triplet.R
R/obj_function.R
R/obj_function_d.R
R/plot_gi_genes.R
R/plot_single_genes.R
R/pre_processRDS.R
R/prepare_matrix_for_pair_reg.R
R/prepare_matrix_for_pair_reg_indmat.R
R/read_gmt_file.R
R/scmageck_best_lambda.R
R/scmageck_correct_bg_exp.R
R/scmageck_eff_estimate.R
R/scmageck_lr.R
R/scmageck_optim_core.R
R/scmageck_rra.R
R/sel_lr.R
R/sel_rra.R
R/selectPlot.R
R/select_target_gene.R
R/single_gene_matrix_regression.R
R/violin_plot.R
README.md
inst/doc/scMAGeCK.R
inst/doc/scMAGeCK.Rmd
inst/doc/scMAGeCK.html
inst/extdata/barcode_rec.txt
inst/extdata/singles_dox_mki67_v3.RDS
inst/extdata/test_symbols.gmt.txt
man/assign_cell_identity.Rd
man/featurePlot.Rd
man/guidematrix_to_triplet.Rd
man/pre_processRDS.Rd
man/scmageck-package.Rd
man/scmageck_best_lambda.Rd
man/scmageck_eff_estimate.Rd
man/scmageck_lr.Rd
man/scmageck_rra.Rd
man/selectPlot.Rd
src/RRA.cpp
src/RRA.h
src/RcppExports.cpp
src/classdef.h
src/fileio.cpp
src/fileio.h
src/math_api.cpp
src/math_api.h
src/rcpp_interface.cpp
src/rngs.cpp
src/rngs.h
src/rvgs.cpp
src/rvgs.h
src/words.cpp
src/words.h
vignettes/scMAGeCK.Rmd
vignettes/scMAGeCK.html
