snpTest: Run association test between SNP and phenotype

In weinstockj/gwassim: Simulate GWAS data

Usage

snpTest(snpName, dat, dist)

Arguments

snpName	the name of the snp to run the test on
dat	the dataframe with the genotype and phenotype attached
dist	the probability distribution of the phenotype This function takes the genotype and phenotype information and runs the association test between the given SNP and the phenotype. The association test is either linear or logistic regression as determined by the distribution of the phenotype.

Value

the pvalue

weinstockj/gwassim documentation built on May 4, 2019, 4:18 a.m.