DataRemix_display: Display the DataRemix result with the help of knitr::kable

In wgmao/DataRemix: DataRemix: a universal data transformation for optimal inference from gene expression datasets

Description

Convert the output from the DataRemix function to a readable table which lists top-ranked parameter combinations and function values. The parameter combinations are ordered based on the rank.

Usage

  DataRemix_display(DataRemix.res, 
                    col.names = c("Rank", "k", "p", "mu", "mean AUPR", "mean AUC"), 
                    top.rank = 15)

Arguments

DataRemix.res	Output from DataRemix() function.
col.names	This provides the column names of output table. Its values depend on the objective. First four values ("Rank", "k", "p", "mu") are fixed. The rest of the default values ("mean AUPR", "mean AUC") is based on the corMatToAUC() function. corMatToAUC() outputs two values which correspond to "mean AUPR" and "mean AUC" by default.
top.rank	The number of top-ranked parameter combinations to show in the table

Value

Display a table generated by knitr::kable().

wgmao/DataRemix documentation built on Aug. 6, 2020, 4:49 p.m.