inst/helpers/findMarkers.md
In whtns/seuratTools: Tools for Managing Seurat Objects
Find Marker Genes
Marker genes can be plotted for each cluster at any pre-computed cluster resolution. Marker genes are determined by Wilcoxon rank sum test using presto or by specificity using genesorteR. Any number of marker genes per cluster can be specified. Available markers for each cluster are sorted based on adjusted p value and thresholded at 5E-2, then the top n genes according to user input are chosed based on adjusted p value.
whtns/seuratTools documentation built on Oct. 28, 2024, 7:18 a.m.
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Find Marker Genes
Marker genes can be plotted for each cluster at any pre-computed cluster resolution. Marker genes are determined by Wilcoxon rank sum test using presto or by specificity using genesorteR. Any number of marker genes per cluster can be specified. Available markers for each cluster are sorted based on adjusted p value and thresholded at 5E-2, then the top n genes according to user input are chosed based on adjusted p value.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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