calc_pseudotime_heatmap: calculate pseudotime heatmaps

In whtns/seuratTools: Tools for Managing Seurat Objects

calculate pseudotime heatmaps

Description

calculate pseudotime heatmaps

Usage

calc_pseudotime_heatmap(
  cds_subset,
  cluster_rows = TRUE,
  dend_k = 6,
  hclust_method = "ward.D2",
  num_clusters = 6,
  hmcols = NULL,
  add_annotation_row = NULL,
  add_annotation_col = NULL,
  show_rownames = FALSE,
  use_gene_short_name = TRUE,
  norm_method = c("log", "vstExprs"),
  scale_max = 3,
  scale_min = -3,
  trend_formula = "~sm.ns(Pseudotime, df=3)",
  return_heatmap = FALSE,
  cores = 1,
  ...
)

Arguments

...

whtns/seuratTools documentation built on April 9, 2024, midnight