load_counts_by_tximport: Run tximport on a set of cells
In whtns/seuratTools: Tools for Managing Seurat Objects
load_counts_by_tximport R Documentation
Run tximport on a set of cells
Description
cells can be quantified using:
stringtie
salmon
Usage
load_counts_by_tximport(
proj_dir,
type = "salmon",
countsFromAbundance = "scaledTPM",
edb = EnsDb.Hsapiens.v86::EnsDb.Hsapiens.v86
)
Arguments
proj_dir
project directory
type
stringtie or salmon
countsFromAbundance
argument provided to tximport
edb
whtns/seuratTools documentation built on Oct. 28, 2024, 7:18 a.m.
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| load_counts_by_tximport | R Documentation |
Run tximport on a set of cells
Description
cells can be quantified using:
stringtie
salmon
Usage
load_counts_by_tximport(
proj_dir,
type = "salmon",
countsFromAbundance = "scaledTPM",
edb = EnsDb.Hsapiens.v86::EnsDb.Hsapiens.v86
)
Arguments
proj_dir |
project directory |
type |
stringtie or salmon |
countsFromAbundance |
argument provided to tximport |
edb |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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