merge_loom: scvelo_assay
In whtns/seuratTools: Tools for Managing Seurat Objects
merge_loom R Documentation
scvelo_assay
Description
run scvelo on a gene or transcript level object
Usage
merge_loom(
object,
loom_path,
assay = "gene",
fit.quantile = 0.05,
check_loom = FALSE
)
Arguments
object
a object
loom_path
path to matching loom file
assay
gene
fit.quantile
how to fit velocity
check_loom
FALSE
Value
a SingleCellExperiment object with RNA velocity calculated
Examples
chevreul_sce <- chevreuldata::human_gene_transcript_sce()
merge_loom(chevreul_sce, "my.loom")
whtns/seuratTools documentation built on Oct. 28, 2024, 7:18 a.m.
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| merge_loom | R Documentation |
scvelo_assay
Description
run scvelo on a gene or transcript level object
Usage
merge_loom(
object,
loom_path,
assay = "gene",
fit.quantile = 0.05,
check_loom = FALSE
)
Arguments
object |
a object |
loom_path |
path to matching loom file |
assay |
gene |
fit.quantile |
how to fit velocity |
check_loom |
FALSE |
Value
a SingleCellExperiment object with RNA velocity calculated
Examples
chevreul_sce <- chevreuldata::human_gene_transcript_sce()
merge_loom(chevreul_sce, "my.loom")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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