plot_scvelo: plot scvelo

In whtns/seuratTools: Tools for Managing Seurat Objects

plot scvelo

Description

run scvelo on a gene or transcript level object

Usage

plot_scvelo(
  object,
  mode = c("steady_state", "deterministic", "stochastic", "dynamical"),
  embedding = c("UMAP", "PCA", "TSNE"),
  ...
)

Arguments

object	a object
mode	deterministic, stochastic, or dynamical
embedding	UMAP, PCA or TSNE
...	extra args passed to run_scvelo

Value

a SingleCellExperiment object with velocity calculated

Examples

chevreul_sce <- chevreuldata::human_gene_transcript_sce()
plot_scvelo(chevreul_sce, embedding = "UMAP", color_by = "velocity_pseudotime")

whtns/seuratTools documentation built on Oct. 28, 2024, 7:18 a.m.