prep_scvelo: scvelo_assay
In whtns/seuratTools: Tools for Managing Seurat Objects
prep_scvelo R Documentation
scvelo_assay
Description
run scvelo on a gene or transcript level seurat object
Usage
prep_scvelo(
seu,
loom_path,
velocity_mode = c("deterministic", "stochastic", "dynamical"),
...
)
Arguments
seu
a seurat object
loom_path
path to matching loom file
...
group.by
metadata to color plot
plot_method
plotting method to use from scvelo
whtns/seuratTools documentation built on April 9, 2024, midnight
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| prep_scvelo | R Documentation |
scvelo_assay
Description
run scvelo on a gene or transcript level seurat object
Usage
prep_scvelo(
seu,
loom_path,
velocity_mode = c("deterministic", "stochastic", "dynamical"),
...
)
Arguments
seu |
a seurat object |
loom_path |
path to matching loom file |
... |
|
group.by |
metadata to color plot |
plot_method |
plotting method to use from scvelo |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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