seurat_pipeline: Run Seurat Pipeline

In whtns/seuratTools: Tools for Managing Seurat Objects

Run Seurat Pipeline

Description

This functions allows you to Preprocess, Cluster and Reduce Dimensions for a single seurat object.

Usage

seurat_pipeline(
  seu,
  assay = "gene",
  resolution = 0.6,
  reduction = "pca",
  organism = "human",
  ...
)

Arguments

seu	A Seurat object
assay	Assay of interest in Seurat object
resolution	Resolution for clustering cells. Default set to 0.6.
reduction	Dimensional reduction object seu
organism	Organism
...	Extra parameters passed to seurat_pipeline

Examples

processed_seu <- seurat_pipeline(panc8)

whtns/seuratTools documentation built on April 9, 2024, midnight